Month / March 2011

by Roslyn

Another reason for eggs

Roman soldiers used them for protein1. In Mexico, men steal them from endangered sea turtles for their supposed effects on virility2. Bird eggs and roe, the ripe ovaries of fish, have a rich balance of proteins, fats and minerals – nutritionally, almost everything a predator needs. The whole point of these things is to feed something for an extended period of time. It’s no wonder eggs are so delicious.

The applications go beyond adding energy to our diets and structure to baked foods. Laying hens also contribute to medicine. Fertilized chicken eggs are used to grow viruses for mass production of vaccines. In 2007, scientists figured out how to genetically engineer hens to incorporate certain cancer-fighting proteins right into their egg whites, in a more efficient way to manufacture drugs that has been dubbed “pharming“3.

This morning, enthusiasts have yet another reason to celebrate, since a new study suggests that bird eggs might hold even more promise for medical research.

It has to do with migration, but not the kind you’re used to hearing about with birds. Cellular migration refers to the movement of cells within an organism during growth or embryonic development. For a long time, biologists studying this behaviour focused on the movement of single cells in isolation. In the last decade, however, the focus shifted to cells moving in a large, cohesive group. This collective migration is a fundamental part of gastrulation and neural crest development – two of the necessary steps for turning a blob of cells into a fully formed embryo during development (watch a time lapse video of this process in zebrafish).

Collective cell movement, or epithelial migration, occurs on a grand scale during bird embryo development. Every fertilized egg contains a tiny blastula, the hollow ball of cells that will eventually become a fetus. Early on, the cells of outer blastoderm layer of the ball start to expand across the vitelline membrane that surrounds the egg yolk, in a process known as epiboly. Eventually, the expanding sheet of cells envelops the entire yolk – a requirement for the yolk sustain the embryo during its transformation from a ball of cells into a viable chick.

Bird embryo and yolk

A chicken embryo grows while attached to its yolk, because of epiboly. Modified from drawing by D.G. Mackean.

This around-the-yolk migration happens rapidly, within days. From the perspective of a single cell, it’s a feat that bioengineer Evan Zamir likens to “an ant walking across the earth”4. And we still don’t know exactly how birds do it, with their humongous yolks; so far, most research on epithelial migration has involved other organisms.

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by Roslyn

I can haz toxoplasmosis

In which you will learn why online cats are so attractive, and discover a new way to lose hours to the internet.

First, the cats. Charlie and I were hashing out the finer points of Facebook, memes and internet superstars, when, in frustration, I brought up his most hated animal.

“Look. Cute baby videos and LOLcats are popular because people send links to their friends. Nobody sits down and says, ‘Well it’s quarter to 10, the same time I always drink my coffee and look for the latest cute cat photos on the–’ ”

Self defeat and laughter mid-sentence, when I remembered living with my friend Jessica in Toronto. She had a brutal job in psychiatric research north of the city. After a hard day, that was exactly what she did. Nothing cheered this woman up like online cat research.

Felis catus is a polarizing species. Some people despise them. Ancient Egyptians and cat ladies have made a religion out of them. The story goes that wild cats were first domesticated in ancient Egypt for useful things like keeping rats out of grain stores and killing poisonous snakes, but this might be more myth than reality. Cats were probably kept around as tame rat-catchers much earlier, certainly before recorded history, and very likely around the beginning of agriculture itself. People were depicting cats on pottery 10,000 years ago1. Cyprus can boast the first Stone Age cat lover. A 9,500 year old burial site on the island is the earliest evidence of humans bonding with these animals, since a cat was intentionally buried alongside a human body there2. The fact that the cat was not butchered, and the inclusion of decorative seashells and stones in the grave, prove that cats had achieved cultural importance beyond their agricultural utility back then.

European wildcat

The European wildcat Felis silvestris is a close relative of the earliest domesticated species. Photo by Péter Csonka from Wikimedia Commons.

But could the cat haters be right – is there something off about feline love? After all, cats aren’t really that useful, at least not when compared to dogs. Dog people might be pleased to hear that when you consider all living and extinct canid and felid species, dogs have bigger brains than cats – probably because they tend to be the more social animals3. Indeed, dogs adapted readily in response to domestication, evolving a number of cognitive abilities that make them particularly good at understanding human gestures – much better, even, than chimpanzees4. Naïve 4-month old puppies will quickly learn what it means when a human points, without any training or close contact with humans beforehand5. Cats can do this too, but they require a lot more effort to learn how6. Dogs can detect certain forms of cancer in humans by smell, and they are often the first ones to notice that something is wrong with their owners7. I have yet to find any high profile studies on feline pathologists. Which raises the question: if cats could do it, would they care enough to try?

And in a bizarre twist, there’s reason to think that our magnetic attraction to cats might be the result of a real parasitic disease.

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by Roslyn

Employed science

It’s when applied science gives back, contributing a piece to the basic research puzzle.

Jaded grad students like me get a warm fuzzy feeling when we hear about people reaping unexpected benefits – economic or social – from the results of pure science. Last night I was reminded that this can work in the opposite direction.

Matthew Mecklenburg and Chris Regan, two physicists from UCLA with interests in quantum theory and its applications for sustainable energy, wanted to design a better transistor. Instead, they discovered something fundamental about the structure of the universe1. Hidden from our eyes and our finest instruments, the space that surrounds us might be more like a chessboard than a continuous expanse.

Mecklenburg, a grad student, was investigating graphene as a potential material to make more efficient transistors – the little bits of silicon that allow computers and essentially all modern electronic devices to function. He needed some precise measurements of the way light interacts with graphene at the nanoscale, to assess feasibility of the new design. These experiments gave Mecklenburg a quantitative picture of the way electrons hop around in the lattice of carbon atoms in graphene. And that’s when the chessboard struck.

Mecklenburg and Regan realized that the hopping behaviour of electrons in graphene was formally equivalent to what happens when an electron flips its “spin” – a theoretical concept that has remained an enigma since it was described in the early 20th century.

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by Roslyn

Identity evolves

“Everyone is special.” The paradoxical refrain of baby boomer parents to their millenial offspring is true, so long as you’re a rodent living in a large, stable group of good communicators.

I recently wrote about the phenomenon of identity signals in animals, where variable colours and patchy-looking patterns can provide signatures of individuality, much like the human face. These are not limited to the visual domain. Think of how easily you can recognize a person’s voice – even someone you don’t know very well – from just a few lines of speech, like when a celebrity turns up in an animated movie.

But I didn’t have a chance to cover the latest news on this topic. In some very plain looking rodents, we now have evidence that individuality evolves1. Some of the plainest looking critters, like the Belding’s ground squirrel shown below, have the most distinctive snarfs and grumbles – and it all has to do with the number of group-mates they typically interact with.

Belding's ground squirrel pups

Two Belding’s ground squirrel pups peek out of a burrow. Photo by Alan Vernon from Wikimedia Commons.

The new results came out this month in the high profile journal Current Biology. Previously, researchers had looked for the evolution of individuality in a handful of bird and bat species. The prior studies examined distinctiveness in the begging calls offspring make to their parents, contrasting pairs of closely-related species that vary in the number of offspring in shared “crèche” or communal nest sites2,3. But nobody had tackled the evolution of individuality in a broad context.

Until Kim Pollard, that is. Pollard, a recent PhD graduate from UCLA, and her supervisor Dan Blumstein decided to look at this question in the social marmots. You might remember Blumstein from another recent post; his interests range from mammal conservation and environmental education to the bioacoustics of movie soundtracks.

For Kim Pollard’s study of identity signalling, marmots were an ideal choice. Marmota is a large genus of 14 different species in the squirrel family, all social, and all with their own alarm calls that they use to warn neighbours and family members about nearby predators. Species like the yellow-bellied marmot and Richardson’s ground squirrel also have the ability to recognize each other based on the unique sound of these calls4,5.

Crucially for Pollard and Blumstein, social group size also varies in the genus, ranging from about 5 to 15 individuals per clan or family group. This allowed the authors to test the hypothesis that group size has been an important factor in the evolution of distinctiveness, since, as they put it, “The bigger the crowd, the more it takes to stand out.”

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by Roslyn

To kill bias, gather good data

I hate myself for this: I have the worst sense of direction.

For the entire year when I was living in my first apartment in Kingston, I would take a circuitous route along King Street and then up Princess on my way home from the Kingston Yacht Club. Nearly two kilometers, when walking up West Street would have got me home in half the time. As Charlie said when I revealed this to him, “Two sides of a triangle is always greater than one.”

It’s not that I didn’t know grade school geometry, or that I wanted a more scenic route. I just stuck to the path I knew would get me there.

I felt a bit triumphant when I realized how long it can take Charlie when you ask him to pick up the milk. The last time I dragged him to the grocery store, I left him alone for a few minutes to use the bathroom, and returned to find him loading pineapple after pineapple after pineapple – painfully slowly, into the cart. We laughed, but I don’t ask him to come with me anymore. Alone, I can collect a week’s worth of food in less than 20 minutes.

I’m not ashamed to admit my navigational failings, either. My field assistant Myra and I happily agreed that our best strategy driving around Los Angeles was that we should always do the opposite of whatever we both thought was correct. It worked.

What I hate is my sneaking suspicion that I’m just a lame stereotype. Maybe I’m a terrible navigator because of biology; female brains are just not suited for getting around.

Hunter, gatherer

Modified from this cartoon. Original source unknown.

Recently, psychologists looked at this sex difference in what seemed like a neat field study of human foraging behaviour – in a grocery store1. Joshua New from Yale University, and his coauthors from UC Santa Barbara, set up a unique experiment in a California farmers’ market: they led men and women around the market, giving them samples like apples, fennel, almonds and honey. Then they brought the subjects back to a central location and asked them to point in the direction of those same food items.

These researchers wanted to test the idea that women outperform men at certain kinds of spatial tasks: while men are thought to be better at vector-based navigation, women might excel at remembering the locations of objects, because of the way foraging roles were divided up when our brains were evolving. It’s thought that in our hunter-gatherer past, big game hunting meant that men had to figure out how to bring heavy prey home by the most direct route. Women foraging closer to home needed a much different set of spatial adaptations2. It’s not that men are better at spatial reasoning in general, you just have to choose the right task3.

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by Roslyn

Mind hacks for athletes and the rest of us

For a change of pace, I thought I’d cover two recent neuroscience findings in today’s post. It’s not all academic, either, since both of these studies might help improve your everyday life. Just sit back, suspend your disbelief and fire up the expectation and reward centers of your brain. You might be able to unleash your inner endurance athlete – or epicure, if so inclined – all through the power of the mind.

I’ll start with a surprising finding that I’ve tried to explain to other long-distance runners, who often take a small snack to eat in the middle of a run. I’ve seen the gamut, from orange slices to salty sports drinks and space-age energy gels. The rationale is that these foods quickly replenish the glucose available as blood sugar, the fuel for muscle contraction.

But if you are running for less than an hour, it is biologically impossible for these snacks to improve your performance. For one thing, the amount of carbohydrate that can be effectively absorbed from the stomach to muscle cells in an hour is too small to make any real difference1. And besides, our muscles can hold vast stores of energy in the form glycogen, more than we can possibly use in that span of time, anyway. Spend an hour on a stationary bike, cycling all-out, and you still won’t fully deplete the glycogen in your muscle tissue – so long as you were charged up to begin with2. And yet the snacks work, even in controlled laboratory tests of exercise performance3. No wonder athletes everywhere continue to use them.

Incredibly, this energy boost has nothing to do with caloric consumption, and everything to do with the act of eating.

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by Roslyn

You are what you feed

What makes you you?

The problem of identity – and its flip-side, change – has been vexing philosophers ever since the discipline got started in ancient Greece. As early as 500 years BC, Heraclitus was musing about the ever-changing nature of a flowing river, recorded by his contemporary Plato with the enduring line, “You cannot step in the same river twice.”

This issue comes up everywhere. In an astronomy course I took at university, the professor gave us a mind-boggling assignment: calculate the number of atoms in your body that were once part of a living dinosaur. The answer was a lot, and though I don’t recall the exact number, the question could have just as easily been about sharing atoms with Heraclitus, or Plato, for that matter. The point is that most of the molecules in our bodies are being replaced and recycled, all of the time1. Like a flowing river, you are literally not the same bag of stuff that you were last year, or even last week; although a more accurate way to put it might be that you are a bag of somewhat different stuff than you contained before.

This raises a tough question. If a different collection of matter can be the same person, how much has to change before you aren’t yourself anymore? The implications are nearer than you might think. Organ transplants, bionic limbs and electronic implants – including devices implanted in the brain – are all within the range of current medicine. How much of a person’s body can we replace and still consider them to be the same person?

I don’t have the answer, and I’m not sure anyone ever will, although some would argue that it is a mistake to assume that there is anything like a constant “you” in the first place. For example, the philosopher Daniel Dennett contends that the idea of a continuous self is really just an illusion produced by the brain2.

Biology has a thing or two to say about the matter. It turns out that part of what makes you you is other species. Specifically, the ones living inside you: the veritable ecosystem of bacteria and other microscopic organisms inside your gut. Evidence is mounting that the microcosm within is an important part of who we are: it provides a unique signature of individuality. It can also determine future health. It might even be part of what defines us as human, since a new study shows that as we evolved from ape ancestors, so did our inner ecosystems3.

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